Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g42220DBnaC06g42220D protein. (539 aa)    
Predicted Functional Partners:
BnaA04g20160D
BnaA04g20160D protein.
      
 0.747
BnaC03g27940D
BnaC03g27940D protein.
      
 0.741
BnaC04g51770D
BnaC04g51770D protein.
   
  
 0.712
BnaCnng62600D
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family.
      
 0.708
BnaA07g00260D
BnaA07g00260D protein; Belongs to the glycosyltransferase 47 family.
      
 0.614
BnaA09g10260D
BnaA09g10260D protein; Belongs to the glycosyltransferase 47 family.
      
 0.614
BnaA02g25440D
BnaA02g25440D protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.592
BnaC02g46870D
BnaC02g46870D protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.592
BnaA06g40020D
BnaA06g40020D protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.592
BnaC05g28950D
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family.
     
 0.573
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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