STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng22040DBnaAnng22040D protein. (132 aa)    
Predicted Functional Partners:
BnaC06g02330D
BnaC06g02330D protein.
      
 0.467
BnaA03g51960D
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
    
 
 0.466
BnaC08g42870D
BnaC08g42870D protein.
      
 0.465
BnaAnng08090D
BnaAnng08090D protein.
      
 0.465
BnaCnng19720D
BnaCnng19720D protein.
      
 0.465
BnaAnng12250D
Flavin-containing monooxygenase.
      
 0.465
BnaC05g49050D
Flavin-containing monooxygenase.
      
 0.465
BnaCnng55460D
BnaCnng55460D protein.
      
 0.465
BnaAnng37780D
BnaAnng37780D protein.
      
 0.465
BnaA04g12790D
BnaA04g12790D protein; Belongs to the cytochrome P450 family.
    
 0.453
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.