Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng20900DBnaAnng20900D protein. (168 aa)    
Predicted Functional Partners:
BnaA09g08450D
BnaA09g08450D protein.
    
 
 0.466
BnaA07g00650D
BnaA07g00650D protein.
    
 0.440
BnaA09g30390D
BnaA09g30390D protein.
      
 0.412
BnaC07g16080D
BnaC07g16080D protein; Belongs to the cyclin family.
     
 0.407
BnaC08g21500D
BnaC08g21500D protein; Belongs to the cyclin family.
     
 0.407
BnaC07g31650D
BnaC07g31650D protein; Belongs to the cyclin family.
     
 0.407
BnaAnng03810D
BnaAnng03810D protein; Belongs to the cyclin family.
     
 0.407
BnaAnng03820D
BnaAnng03820D protein; Belongs to the cyclin family.
     
 0.407
BnaA03g50910D
BnaA03g50910D protein; Belongs to the cyclin family.
     
 0.407
BnaC03g77070D
BnaC03g77070D protein; Belongs to the cyclin family.
     
 0.407
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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