STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng48270DBnaCnng48270D protein. (733 aa)    
Predicted Functional Partners:
BnaA09g17950D
BnaA09g17950D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
     
  0.650
BnaC03g29810D
BnaC03g29810D protein.
      
 0.493
BnaC04g51860D
BnaC04g51860D protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
  
   
 0.457
BnaCnng48020D
Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
      
 0.451
BnaAnng37040D
BnaAnng37040D protein.
      
 0.451
BnaA08g04580D
Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
      
 0.437
BnaA08g29720D
BnaA08g29720D protein.
      
 0.437
BnaC08g46160D
BnaC08g46160D protein.
      
 0.437
BnaC05g09770D
BnaC05g09770D protein.
      
 0.434
BnaA05g10830D
BnaA05g10830D protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
      
 0.408
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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