STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g56020DBnaC04g56020D protein. (388 aa)    
Predicted Functional Partners:
BnaC03g22780D
BnaC03g22780D protein.
     
 
0.900
BnaA03g56510D
BnaA03g56510D protein.
     
 
0.900
BnaC05g35100D
BnaC05g35100D protein.
   
    0.871
BnaA06g09860D
BnaA06g09860D protein.
   
    0.871
BnaC05g11480D
BnaC05g11480D protein.
   
    0.871
BnaA01g22250D
BnaA01g22250D protein.
   
  
 0.863
BnaA01g22260D
BnaA01g22260D protein.
   
  
 0.863
BnaC01g43120D
BnaC01g43120D protein.
   
  
 0.863
BnaCnng68790D
BnaCnng68790D protein.
   
  
 0.863
BnaC09g29130D
BnaC09g29130D protein.
   
 
 0.716
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.