STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA01g36450DBnaA01g36450D protein. (42 aa)    
Predicted Functional Partners:
BnaC03g47230D
BnaC03g47230D protein.
    
 
 0.871
BnaC03g64040D
BnaC03g64040D protein.
    
   0.864
BnaC03g71910D
BnaC03g71910D protein.
   
   0.791
BnaA04g17180D
BnaA04g17180D protein.
   
   0.791
BnaA09g06770D
BnaA09g06770D protein.
    
   0.747
BnaA06g23400D
BnaA06g23400D protein.
    
   0.747
BnaA06g23390D
BnaA06g23390D protein.
    
   0.747
BnaA05g17840D
BnaA05g17840D protein.
    
   0.720
BnaAnng32060D
BnaAnng32060D protein.
    
   0.720
BnaC05g00630D
BnaC05g00630D protein.
    
   0.712
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.