STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng51220DBnaCnng51220D protein. (96 aa)    
Predicted Functional Partners:
BnaC02g20770D
BnaC02g20770D protein.
  
 
 0.637
BnaCnng07840D
BnaCnng07840D protein.
  
 
 0.629
BnaA06g36240D
Nuclear cap-binding protein subunit 2.
    
 0.580
BnaA05g19970D
BnaA05g19970D protein.
  
   
 0.576
BnaC06g29630D
BnaC06g29630D protein.
    
 
 0.552
BnaC02g46810D
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
      
 0.550
BnaC05g14310D
BnaC05g14310D protein.
  
     0.539
BnaA06g12790D
BnaA06g12790D protein.
  
     0.537
BnaA02g06700D
BnaA02g06700D protein.
  
     0.536
BnaC02g45880D
BnaC02g45880D protein.
  
     0.534
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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