Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g39120DBnaA06g39120D protein. (911 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
    
  0.659
BnaA07g00650D
BnaA07g00650D protein.
    
   0.641
BnaA03g00900D
BnaA03g00900D protein.
     
 0.633
BnaA09g35410D
BnaA09g35410D protein.
      
 0.614
BnaC09g21860D
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.542
BnaA09g19860D
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.542
BnaC01g19230D
BnaC01g19230D protein.
      
 0.540
BnaA03g58290D
BnaA03g58290D protein.
      
 0.513
BnaC01g40890D
BnaC01g40890D protein.
      
 0.513
BnaCnng66490D
Carboxypeptidase; Belongs to the peptidase S10 family.
      
 0.492
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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