STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC02g12360DBnaC02g12360D protein. (116 aa)    
Predicted Functional Partners:
BnaA09g06240D
BnaA09g06240D protein.
   
 0.968
BnaC09g50920D
BnaC09g50920D protein.
   
 0.968
BnaC03g58970D
BnaC03g58970D protein.
    
 0.954
BnaA09g54150D
BnaA09g54150D protein.
    
 0.954
BnaA09g08290D
BnaA09g08290D protein.
    
 0.953
BnaC07g04030D
BnaC07g04030D protein.
   
 0.939
BnaC05g47260D
Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 0.939
BnaA05g33000D
Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 0.939
BnaCnng39220D
BnaCnng39220D protein.
   
 0.933
BnaC08g11760D
BnaC08g11760D protein.
    
 0.906
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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