STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC01g42970DBnaC01g42970D protein. (205 aa)    
Predicted Functional Partners:
BnaC04g36300D
BnaC04g36300D protein.
    
 
 0.831
BnaC04g43330D
BnaC04g43330D protein.
    
 
 0.831
BnaC06g18120D
BnaC06g18120D protein.
    
 
 0.705
BnaC06g18000D
BnaC06g18000D protein.
    
 
 0.705
BnaC06g42970D
BnaC06g42970D protein.
    
 
 0.705
BnaCnng11640D
BnaCnng11640D protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.607
BnaCnng11650D
BnaCnng11650D protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.607
BnaCnng11620D
BnaCnng11620D protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.607
BnaC09g14690D
BnaC09g14690D protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.607
BnaA09g14140D
BnaA09g14140D protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.607
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.