STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA04g28950DBnaA04g28950D protein. (772 aa)    
Predicted Functional Partners:
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.523
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.511
BnaC04g44540D
BnaC04g44540D protein.
  
 
  0.497
BnaA01g33720D
BnaA01g33720D protein.
  
 
  0.487
BnaC08g40810D
BnaC08g40810D protein.
  
     0.485
BnaC01g40310D
BnaC01g40310D protein.
  
 
  0.485
BnaA01g24490D
BnaA01g24490D protein.
  
     0.484
BnaCnng64530D
BnaCnng64530D protein.
  
     0.480
BnaC02g01410D
BnaC02g01410D protein.
  
     0.476
BnaAnng06330D
BnaAnng06330D protein.
  
     0.475
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.