STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng53410DBnaCnng53410D protein. (396 aa)    
Predicted Functional Partners:
BnaA01g05220D
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
      
 0.493
BnaC01g00040D
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
      
 0.493
BnaC09g47920D
BnaC09g47920D protein.
      
 0.491
BnaC03g35670D
BnaC03g35670D protein.
      
 0.485
BnaC01g39490D
BnaC01g39490D protein.
      
 0.485
BnaA10g30110D
BnaA10g30110D protein.
      
 0.485
BnaC03g44090D
BnaC03g44090D protein.
      
 0.469
BnaC08g14160D
BnaC08g14160D protein.
      
 0.469
BnaA08g25830D
BnaA08g25830D protein.
      
 0.469
BnaC07g04010D
BnaC07g04010D protein.
      
 0.469
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.