STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g54740DBnaA09g54740D protein. (343 aa)    
Predicted Functional Partners:
BnaAnng41280D
BnaAnng41280D protein.
  
 
 0.539
BnaC06g43390D
BnaC06g43390D protein.
  
 
 0.535
BnaA07g24230D
BnaA07g24230D protein.
  
 
 0.523
BnaA08g19870D
BnaA08g19870D protein.
  
 
  0.516
BnaC05g50980D
BnaC05g50980D protein.
  
 
  0.512
BnaCnng12240D
BnaCnng12240D protein.
  
 
  0.509
BnaC03g58500D
BnaC03g58500D protein.
  
 
  0.506
BnaA04g16710D
BnaA04g16710D protein.
  
 
  0.505
BnaA02g06470D
BnaA02g06470D protein.
  
 
  0.502
BnaCnng38870D
BnaCnng38870D protein.
  
 
  0.502
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.