STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng60950DBnaCnng60950D protein. (66 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
     
 0.744
BnaC03g73190D
BnaC03g73190D protein.
   
 
 0.541
BnaC03g54780D
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 0.475
BnaAnng11460D
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.464
BnaA09g51640D
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.464
BnaA02g12550D
BnaA02g12550D protein.
    
 0.442
BnaC06g27710D
BnaC06g27710D protein.
    
 0.442
BnaC02g17020D
BnaC02g17020D protein.
    
 0.442
BnaA09g36200D
BnaA09g36200D protein.
    
  0.434
BnaC04g47780D
Nuclear pore protein.
     
 0.422
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.