STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng28970DBnaAnng28970D protein. (157 aa)    
Predicted Functional Partners:
BnaA06g20670D
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.736
BnaC03g57240D
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.736
BnaA06g17120D
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.736
BnaCnng62340D
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.736
BnaA10g06820D
BnaA10g06820D protein.
    
 
 0.708
BnaC01g20340D
BnaC01g20340D protein.
    
 
 0.708
BnaA02g10230D
BnaA02g10230D protein.
    
 
 0.708
BnaAnng13820D
BnaAnng13820D protein.
    
 
 0.708
BnaCnng76240D
BnaCnng76240D protein.
    
 
 0.708
BnaC07g49760D
BnaC07g49760D protein.
    
 0.704
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.