Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BnaA06g32420D | BnaA08g12390D | A0A078FKL7 | A0A078GE09 | BnaA06g32420D protein. | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | 0.983 |
BnaA06g32420D | BnaA08g28140D | A0A078FKL7 | A0A078FMA4 | BnaA06g32420D protein. | BnaA08g28140D protein. | 0.971 |
BnaA06g32420D | BnaA09g01900D | A0A078FKL7 | A0A078G3Y8 | BnaA06g32420D protein. | Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] | 0.546 |
BnaA06g32420D | BnaA09g04670D | A0A078FKL7 | A0A078G310 | BnaA06g32420D protein. | BnaA09g04670D protein. | 0.964 |
BnaA06g32420D | BnaAnng23050D | A0A078FKL7 | A0A078JNA7 | BnaA06g32420D protein. | Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family. | 0.583 |
BnaA06g32420D | BnaC02g00110D | A0A078FKL7 | A0A078HS55 | BnaA06g32420D protein. | Ubiquitinyl hydrolase 1. | 0.963 |
BnaA06g32420D | BnaC03g67470D | A0A078FKL7 | A0A078HMX0 | BnaA06g32420D protein. | BnaC03g67470D protein. | 0.983 |
BnaA06g32420D | BnaC05g02960D | A0A078FKL7 | A0A078G0X3 | BnaA06g32420D protein. | BnaC05g02960D protein. | 0.971 |
BnaA06g32420D | BnaC06g10570D | A0A078FKL7 | A0A078GLM4 | BnaA06g32420D protein. | BnaC06g10570D protein. | 0.975 |
BnaA06g32420D | BnaC07g48960D | A0A078FKL7 | A0A078IR12 | BnaA06g32420D protein. | BnaC07g48960D protein. | 0.551 |
BnaA08g12390D | BnaA06g32420D | A0A078GE09 | A0A078FKL7 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | BnaA06g32420D protein. | 0.983 |
BnaA08g12390D | BnaA08g28140D | A0A078GE09 | A0A078FMA4 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | BnaA08g28140D protein. | 0.991 |
BnaA08g12390D | BnaA09g01900D | A0A078GE09 | A0A078G3Y8 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] | 0.983 |
BnaA08g12390D | BnaA09g04670D | A0A078GE09 | A0A078G310 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | BnaA09g04670D protein. | 0.994 |
BnaA08g12390D | BnaAnng23050D | A0A078GE09 | A0A078JNA7 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family. | 0.523 |
BnaA08g12390D | BnaC02g00110D | A0A078GE09 | A0A078HS55 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | Ubiquitinyl hydrolase 1. | 0.986 |
BnaA08g12390D | BnaC03g67470D | A0A078GE09 | A0A078HMX0 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | BnaC03g67470D protein. | 0.900 |
BnaA08g12390D | BnaC05g02960D | A0A078GE09 | A0A078G0X3 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | BnaC05g02960D protein. | 0.991 |
BnaA08g12390D | BnaC06g10570D | A0A078GE09 | A0A078GLM4 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | BnaC06g10570D protein. | 0.991 |
BnaA08g12390D | BnaC07g48960D | A0A078GE09 | A0A078IR12 | Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. | BnaC07g48960D protein. | 0.983 |
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