STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng54760DBnaCnng54760D protein. (731 aa)    
Predicted Functional Partners:
BnaC05g36680D
BnaC05g36680D protein.
   
 
 0.527
BnaC04g48390D
Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Belongs to the ferritin family.
   
  
 0.486
BnaC07g33210D
BnaC07g33210D protein.
   
 
 0.468
BnaAnng08310D
BnaAnng08310D protein.
      
 0.467
BnaA08g27260D
BnaA08g27260D protein.
      
 0.465
BnaC05g01530D
BnaC05g01530D protein.
      
 0.465
BnaAnng20980D
BnaAnng20980D protein.
      
 0.465
BnaA03g52020D
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily.
    
 0.439
BnaC05g02220D
Long-chain-alcohol oxidase; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation.
    
 0.426
BnaA03g58930D
Long-chain-alcohol oxidase; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation.
    
 0.426
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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