Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g52680DBnaA09g52680D protein. (503 aa)    
Predicted Functional Partners:
BnaA09g55840D
BnaA09g55840D protein.
      
 0.694
BnaCnng52460D
BnaCnng52460D protein.
  
0.568
BnaA06g24960D
BnaA06g24960D protein.
   
    0.533
BnaC03g48610D
BnaC03g48610D protein.
   
    0.533
BnaC03g48620D
BnaC03g48620D protein.
   
    0.533
BnaC03g45080D
BnaC03g45080D protein.
      
 0.514
BnaA04g16720D
RING-type E3 ubiquitin transferase.
      
 0.501
BnaC08g41080D
BnaC08g41080D protein.
  
0.497
BnaA03g51900D
BnaA03g51900D protein.
      
 0.494
BnaA09g47040D
BnaA09g47040D protein.
  
0.494
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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