STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng31430DBnaAnng31430D protein; Belongs to the small heat shock protein (HSP20) family. (249 aa)    
Predicted Functional Partners:
BnaC09g54540D
BnaC09g54540D protein.
   
 
 0.726
BnaC06g29960D
BnaC06g29960D protein.
    
 
 0.665
BnaA01g27960D
BnaA01g27960D protein.
    
 
 0.665
BnaC05g14140D
BnaC05g14140D protein; Belongs to the actin family.
    
 
 0.646
BnaA06g12580D
BnaA06g12580D protein; Belongs to the actin family.
    
 
 0.646
BnaC08g02310D
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.598
BnaA03g18330D
BnaA03g18330D protein.
    
 
 0.591
BnaC03g21850D
BnaC03g21850D protein.
    
 
 0.591
BnaA07g08370D
BnaA07g08370D protein.
  
 
   0.545
BnaC01g36220D
BnaC01g36220D protein.
  
 
 
 0.545
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.