STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng32280DBnaAnng32280D protein. (430 aa)    
Predicted Functional Partners:
BnaC.PSY.a
BnaC09g40730D protein.
  
 
 0.521
BnaC07g16350D
BnaC07g16350D protein.
   
 0.520
BnaA09g07610D
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.
   
 0.520
BnaC08g48380D
BnaC08g48380D protein.
   
 0.520
BnaC02g01790D
BnaC02g01790D protein; Belongs to the cytochrome P450 family.
  
 0.515
BnaC02g36740D
BnaC02g36740D protein; Belongs to the cytochrome P450 family.
  
  
  0.507
BnaC03g30330D
BnaC03g30330D protein; Belongs to the cytochrome P450 family.
  
  
  0.504
BnaC08g44970D
BnaC08g44970D protein.
  
  
 0.503
BnaA09g15960D
BnaA09g15960D protein; Belongs to the cytochrome P450 family.
  
  
  0.502
BnaCnng60990D
BnaCnng60990D protein; Belongs to the cytochrome P450 family.
  
  
  0.502
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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