STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng32010DBnaAnng32010D protein. (286 aa)    
Predicted Functional Partners:
BnaC03g59640D
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
    
 
 0.884
BnaC03g62810D
BnaC03g62810D protein; Belongs to the protein kinase superfamily.
    
 
 0.702
BnaA03g58360D
BnaA03g58360D protein; Belongs to the protein kinase superfamily.
    
 
 0.702
BnaC07g50210D
BnaC07g50210D protein; Belongs to the protein kinase superfamily.
    
 
 0.702
BnaAnng35300D
BnaAnng35300D protein; Belongs to the protein kinase superfamily.
    
 
 0.702
BnaAnng31110D
BnaAnng31110D protein; Belongs to the protein kinase superfamily.
    
 
 0.702
BnaA06g13320D
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
   
 0.651
BnaC05g11560D
BnaC05g11560D protein.
      
 0.588
BnaC05g15390D
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
      
 0.584
BnaC05g29330D
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
      
 0.580
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.