STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng32240DBnaAnng32240D protein. (567 aa)    
Predicted Functional Partners:
BnaA04g05430D
BnaA04g05430D protein.
   
 
 0.877
BnaCnng54580D
BnaCnng54580D protein.
   
 
 0.877
BnaUnng03220D
BnaUnng03220D protein.
   
 
 0.877
BnaCnng24720D
BnaCnng24720D protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
      
 0.610
BnaA03g45860D
BnaA03g45860D protein.
      
 0.575
BnaC03g21780D
BnaC03g21780D protein.
      
 0.575
BnaA05g12980D
BnaA05g12980D protein.
      
 0.575
BnaAnng26420D
BnaAnng26420D protein.
  
 
0.540
BnaCnng61630D
BnaCnng61630D protein.
  
 
0.536
BnaA04g05420D
BnaA04g05420D protein.
  
 
0.535
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.