STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng30490DBnaAnng30490D protein. (469 aa)    
Predicted Functional Partners:
BnaA09g13300D
BnaA09g13300D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.874
BnaC04g19630D
BnaC04g19630D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.863
BnaC04g00410D
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
  
 0.850
BnaA03g16860D
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
  
 0.850
BnaA01g36920D
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
  
 0.850
BnaAnng12450D
BnaAnng12450D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.793
BnaA09g44060D
BnaA09g44060D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.774
BnaCnng33000D
BnaCnng33000D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.774
BnaCnng67880D
BnaCnng67880D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.774
BnaC08g41620D
BnaC08g41620D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.730
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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