STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaAnng39940DBnaAnng39940D protein. (116 aa)    
Predicted Functional Partners:
BnaA04g05330D
BnaA04g05330D protein.
    
  0.676
BnaC03g72450D
BnaC03g72450D protein.
    
 0.463
BnaA09g39760D
BnaA04g27270D protein.
    
 0.463
BnaA07g09990D
BnaA07g09990D protein.
    
 0.463
BnaA08g20480D
BnaA08g20480D protein.
    
 0.463
BnaCnng30170D
BnaCnng30170D protein.
    
 0.458
BnaC09g38430D
BnaC09g38430D protein.
     
 0.428
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.