STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng68300DBnaCnng68300D protein; Belongs to the GRAS family. (507 aa)    
Predicted Functional Partners:
BnaA05g32040D
BnaA05g32040D protein.
    
 
 0.828
BnaC05g46680D
BnaC05g46680D protein.
    
 
 0.828
BnaC05g11920D
BnaC05g11920D protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
      
 0.801
BnaA09g20650D
BnaA09g20650D protein.
    
 
 0.751
BnaA09g01090D
BnaA09g01090D protein; Belongs to the terpene synthase family.
  
   
 0.738
BnaA02g17120D
BnaA02g17120D protein.
  
 
 
 0.724
BnaA01g13690D
BnaA01g13690D protein.
    
 
 0.675
BnaCnng55170D
BnaCnng55170D protein.
    
 
 0.671
BnaCnng69280D
BnaCnng69280D protein.
    
 
 0.671
GID1B
Gibberellin receptor 1B.
    
 
 0.671
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.