Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g58100DBnaA03g58100D protein. (207 aa)    
Predicted Functional Partners:
BnaC03g40790D
BnaC03g40790D protein.
  
 0.554
BnaA01g26270D
BnaA01g26270D protein.
  
 0.546
BnaC04g24880D
BnaC04g24880D protein.
  
 0.543
BnaCnng65160D
BnaCnng65160D protein.
  
 0.481
BnaCnng48080D
BnaCnng48080D protein.
  
 0.470
BnaAnng11710D
BnaAnng11710D protein.
  
 0.465
BnaCnng45690D
BnaCnng45690D protein.
  
 0.464
BnaA03g53370D
BnaA03g53370D protein.
      
 0.450
BnaA05g16720D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
  
 
  0.448
BnaC01g23100D
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
  
 
  0.446
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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