BnaC08g49430D protein (Brassica napus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BnaC08g49430D

BnaC08g49430D protein; Belongs to the protein kinase superfamily. (436 aa)

Predicted Functional Partners:

BnaCnng17060D

0.701

BnaA02g33860D

0.662

BnaA09g03810D

0.655

BnaA06g37100D

0.612

BnaC06g27720D

0.545

BnaA09g44730D

0.545

BnaA07g38990D

0.545

BnaC09g54490D

0.540

BnaC03g63590D

0.539

BnaC03g58020D

0.539

Your Current Organism:

Brassica napus

NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BnaA02g33860D	BnaA07g38990D	A0A078GXX3	A0A078J924	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	BnaA07g38990D protein; Belongs to the protein kinase superfamily.	0.854
BnaA02g33860D	BnaA09g03810D	A0A078GXX3	A0A078G4V0	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	BnaA09g03810D protein; Belongs to the cyclin family.	0.801
BnaA02g33860D	BnaA09g44730D	A0A078GXX3	A0A078G9M3	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	BnaA09g44730D protein; Belongs to the protein kinase superfamily.	0.854
BnaA02g33860D	BnaC03g58020D	A0A078GXX3	A0A078FES4	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	BnaC03g58020D protein; Belongs to the cyclin family.	0.865
BnaA02g33860D	BnaC03g63590D	A0A078GXX3	A0A078F8G7	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	BnaC03g63590D protein; Belongs to the cyclin family.	0.865
BnaA02g33860D	BnaC06g27720D	A0A078GXX3	A0A078E4A9	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	BnaC06g27720D protein; Belongs to the protein kinase superfamily.	0.854
BnaA02g33860D	BnaC08g49430D	A0A078GXX3	A0A078JZP6	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	BnaC08g49430D protein; Belongs to the protein kinase superfamily.	0.662
BnaA06g37100D	BnaC08g49430D	A0A078GCG1	A0A078JZP6	HVA22-like protein.	BnaC08g49430D protein; Belongs to the protein kinase superfamily.	0.612
BnaA07g38990D	BnaA02g33860D	A0A078J924	A0A078GXX3	BnaA07g38990D protein; Belongs to the protein kinase superfamily.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.854
BnaA07g38990D	BnaA09g03810D	A0A078J924	A0A078G4V0	BnaA07g38990D protein; Belongs to the protein kinase superfamily.	BnaA09g03810D protein; Belongs to the cyclin family.	0.998
BnaA07g38990D	BnaA09g44730D	A0A078J924	A0A078G9M3	BnaA07g38990D protein; Belongs to the protein kinase superfamily.	BnaA09g44730D protein; Belongs to the protein kinase superfamily.	0.907
BnaA07g38990D	BnaC03g58020D	A0A078J924	A0A078FES4	BnaA07g38990D protein; Belongs to the protein kinase superfamily.	BnaC03g58020D protein; Belongs to the cyclin family.	0.876
BnaA07g38990D	BnaC03g63590D	A0A078J924	A0A078F8G7	BnaA07g38990D protein; Belongs to the protein kinase superfamily.	BnaC03g63590D protein; Belongs to the cyclin family.	0.876
BnaA07g38990D	BnaC06g27720D	A0A078J924	A0A078E4A9	BnaA07g38990D protein; Belongs to the protein kinase superfamily.	BnaC06g27720D protein; Belongs to the protein kinase superfamily.	0.904
BnaA07g38990D	BnaC08g49430D	A0A078J924	A0A078JZP6	BnaA07g38990D protein; Belongs to the protein kinase superfamily.	BnaC08g49430D protein; Belongs to the protein kinase superfamily.	0.545
BnaA09g03810D	BnaA02g33860D	A0A078G4V0	A0A078GXX3	BnaA09g03810D protein; Belongs to the cyclin family.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.801
BnaA09g03810D	BnaA07g38990D	A0A078G4V0	A0A078J924	BnaA09g03810D protein; Belongs to the cyclin family.	BnaA07g38990D protein; Belongs to the protein kinase superfamily.	0.998
BnaA09g03810D	BnaA09g44730D	A0A078G4V0	A0A078G9M3	BnaA09g03810D protein; Belongs to the cyclin family.	BnaA09g44730D protein; Belongs to the protein kinase superfamily.	0.999
BnaA09g03810D	BnaC03g58020D	A0A078G4V0	A0A078FES4	BnaA09g03810D protein; Belongs to the cyclin family.	BnaC03g58020D protein; Belongs to the cyclin family.	0.945
BnaA09g03810D	BnaC03g63590D	A0A078G4V0	A0A078F8G7	BnaA09g03810D protein; Belongs to the cyclin family.	BnaC03g63590D protein; Belongs to the cyclin family.	0.914