Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng77100DBnaCnng77100D protein. (319 aa)    
Predicted Functional Partners:
BnaC02g38300D
BnaC02g38300D protein.
    
 0.779
BnaAnng07990D
BnaAnng07990D protein.
    
 0.779
BnaA08g14970D
BnaA08g14970D protein.
   
  
 0.669
BnaC03g62330D
BnaC03g62330D protein.
   
  
 0.669
BnaC07g16820D
BnaC07g16820D protein.
  
 0.668
BnaA07g12770D
BnaA07g12770D protein.
  
 0.664
BnaA09g08020D
BnaA09g08020D protein.
  
 0.662
BnaC03g44690D
BnaC03g44690D protein.
    
 
 0.635
BnaA06g16910D
BnaA06g16910D protein.
      
 0.629
BnaCnng12110D
BnaCnng12110D protein.
      
 0.629
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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