STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaX.VTE4.d1Gamma-tocopherol methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family. (347 aa)    
Predicted Functional Partners:
BnaX.VTE1.b
BnaA03g52200D protein.
  
 0.988
BnaA02g11840D
BnaA02g11840D protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family.
  
  
 
0.900
BnaC.PSY.a
BnaC09g40730D protein.
   
 0.717
BnaC08g02310D
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.687
BnaC09g50600D
BnaC09g50600D protein.
      
 0.679
BnaCnng64700D
BnaCnng64700D protein.
      
 0.679
BnaC05g04530D
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.677
BnaC08g44820D
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.677
BnaC05g48230D
BnaC05g48230D protein; Belongs to the sterol desaturase family.
   
 
 0.659
BnaA05g33480D
BnaA05g33480D protein; Belongs to the sterol desaturase family.
   
 
 0.659
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.