Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF77448.1 | SHF77580.1 | SAMN05443663_101109 | SAMN05443663_101112 | Cell division protein FtsQ. | Cell division protein FtsW; Belongs to the SEDS family. | 0.943 |
SHF77448.1 | SHF77752.1 | SAMN05443663_101109 | SAMN05443663_101116 | Cell division protein FtsQ. | Cell division protein FtsI (penicillin-binding protein 3). | 0.940 |
SHF77448.1 | SHF95256.1 | SAMN05443663_101109 | SAMN05443663_101612 | Cell division protein FtsQ. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.944 |
SHF77448.1 | SHG53511.1 | SAMN05443663_101109 | SAMN05443663_103116 | Cell division protein FtsQ. | Sporulation related domain-containing protein. | 0.898 |
SHF77448.1 | SHG54331.1 | SAMN05443663_101109 | SAMN05443663_103135 | Cell division protein FtsQ. | Protein of unknown function. | 0.897 |
SHF77448.1 | SHH33540.1 | SAMN05443663_101109 | SAMN05443663_10714 | Cell division protein FtsQ. | Septum formation initiator. | 0.997 |
SHF77448.1 | ftsA | SAMN05443663_101109 | SAMN05443663_101108 | Cell division protein FtsQ. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.982 |
SHF77448.1 | murC | SAMN05443663_101109 | SAMN05443663_101110 | Cell division protein FtsQ. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.984 |
SHF77448.1 | murD | SAMN05443663_101109 | SAMN05443663_101113 | Cell division protein FtsQ. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.916 |
SHF77448.1 | secY | SAMN05443663_101109 | SAMN05443663_11396 | Cell division protein FtsQ. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.919 |
SHF77580.1 | SHF77448.1 | SAMN05443663_101112 | SAMN05443663_101109 | Cell division protein FtsW; Belongs to the SEDS family. | Cell division protein FtsQ. | 0.943 |
SHF77580.1 | SHF77752.1 | SAMN05443663_101112 | SAMN05443663_101116 | Cell division protein FtsW; Belongs to the SEDS family. | Cell division protein FtsI (penicillin-binding protein 3). | 0.976 |
SHF77580.1 | SHF95256.1 | SAMN05443663_101112 | SAMN05443663_101612 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.692 |
SHF77580.1 | SHG53511.1 | SAMN05443663_101112 | SAMN05443663_103116 | Cell division protein FtsW; Belongs to the SEDS family. | Sporulation related domain-containing protein. | 0.595 |
SHF77580.1 | SHG54331.1 | SAMN05443663_101112 | SAMN05443663_103135 | Cell division protein FtsW; Belongs to the SEDS family. | Protein of unknown function. | 0.732 |
SHF77580.1 | ftsA | SAMN05443663_101112 | SAMN05443663_101108 | Cell division protein FtsW; Belongs to the SEDS family. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.803 |
SHF77580.1 | murC | SAMN05443663_101112 | SAMN05443663_101110 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.940 |
SHF77580.1 | murD | SAMN05443663_101112 | SAMN05443663_101113 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.986 |
SHF77752.1 | SHF77448.1 | SAMN05443663_101116 | SAMN05443663_101109 | Cell division protein FtsI (penicillin-binding protein 3). | Cell division protein FtsQ. | 0.940 |
SHF77752.1 | SHF77580.1 | SAMN05443663_101116 | SAMN05443663_101112 | Cell division protein FtsI (penicillin-binding protein 3). | Cell division protein FtsW; Belongs to the SEDS family. | 0.976 |
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