STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG24406.1Beta-barrel assembly machine subunit BamD. (264 aa)    
Predicted Functional Partners:
SHF82106.1
Beta-barrel assembly machine subunit BamA.
 
 
 0.937
SHG24434.1
RNA polymerase Rpb6.
 
 
 
 0.923
SHG24459.1
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
 
     0.831
SHG24491.1
Protein of unknown function.
 
     0.819
SHG29757.1
Hypothetical protein.
   
 
 0.798
SHG53975.1
Hypothetical protein.
   
 
 0.798
SHG69786.1
Hypothetical protein.
   
 
 0.798
SHH41325.1
Hypothetical protein.
   
 
 0.798
SHH53664.1
PQQ-like domain-containing protein.
   
 
 0.798
SHF90147.1
Surface antigen.
 
 
 0.781
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.