STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG53975.1Hypothetical protein. (430 aa)    
Predicted Functional Partners:
SHG54105.1
Type IX secretion system membrane protein, PorP/SprF family.
 
    0.891
SHG54067.1
Hypothetical protein.
 
     0.882
SHG53931.1
Hypothetical protein.
 
     0.869
SHG24406.1
Beta-barrel assembly machine subunit BamD.
   
 
 0.798
SHG54195.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.785
SHG54145.1
Gliding motility-associated C-terminal domain-containing protein.
 
     0.778
SHG30849.1
Hypothetical protein.
  
     0.773
SHH85054.1
Hypothetical protein.
  
   0.745
SHF75477.1
Protein of unknown function.
  
     0.739
SHH33351.1
Predicted lipoprotein.
  
     0.734
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.