STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG50996.1Ribosomal protein S18 acetylase RimI. (155 aa)    
Predicted Functional Partners:
SHG22736.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.676
SHH76756.1
Lysine N6-hydroxylase.
  
 
 0.659
SHG50947.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.612
SHH43398.1
Phosphotransferase enzyme family protein.
    
  0.608
SHG51038.1
Hypothetical protein.
       0.561
dut
dUTP pyrophosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.535
SHG94784.1
Spore coat polysaccharide biosynthesis protein SpsF, cytidylyltransferase family.
  
 
 0.531
SHH24156.1
Glutamate synthase (NADH) large subunit.
   
 
 0.528
SHG51540.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.527
SHG71280.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
    
  0.507
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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