STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG49001.1WG containing repeat-containing protein. (406 aa)    
Predicted Functional Partners:
SHH65878.1
Signal transduction histidine kinase.
   
 0.896
SHG32679.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.862
SHG28159.1
Hypothetical protein.
   
 0.852
SHG49044.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.791
SHH65560.1
His Kinase A (phospho-acceptor) domain-containing protein.
    
 0.762
SHH09030.1
Multi-sensor hybrid histidine kinase.
    
 0.759
SHG49220.1
Hypothetical protein.
 
     0.746
SHG49392.1
Hypothetical protein.
 
     0.725
SHG49523.1
ABC-2 type transport system permease protein.
 
  
 0.721
SHG49135.1
Acyl carrier protein.
 
    0.694
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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