STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG86362.1TonB-dependent Receptor Plug Domain. (873 aa)    
Predicted Functional Partners:
SHG86398.1
Protein of unknown function.
 
     0.912
SHH23616.1
Protein of unknown function.
 
     0.759
SHG86332.1
FecR family protein.
 
     0.696
SHH83569.1
Outer membrane transport energization protein TonB.
  
 
  0.643
SHG82266.1
WD40-like Beta Propeller Repeat.
  
 
 
 0.618
SHH00710.1
WD40-like Beta Propeller Repeat.
  
 
 
 0.610
SHF88179.1
Hypothetical protein.
    
  0.542
SHF88214.1
TonB protein C-terminal.
    
  0.542
SHF88246.1
Hypothetical protein.
    
  0.542
SHF90758.1
Hypothetical protein.
    
  0.542
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.