STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG84206.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
SHG84251.1
Protein of unknown function.
 
     0.946
SHG84294.1
Protein of unknown function.
 
     0.944
SHG84167.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.899
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.896
SHG84118.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain.
 
 
   0.772
SHH17073.1
Hypothetical protein.
  
     0.731
SHG29933.1
Hypothetical protein.
  
     0.706
SHG64615.1
Putative DNA-binding domain-containing protein.
  
     0.695
SHG15442.1
Putative MetA-pathway of phenol degradation.
  
     0.654
SHG69586.1
Protein of unknown function.
  
     0.636
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.