STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH08992.1Hypothetical protein. (264 aa)    
Predicted Functional Partners:
SHG19505.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
    
  0.726
SHF82910.1
Protein of unknown function.
  
     0.674
SHF96018.1
Peptidase C39 family protein.
  
     0.542
SHG24748.1
Peptide chain release factor.
  
     0.540
SHH09030.1
Multi-sensor hybrid histidine kinase.
       0.536
SHH27804.1
Hypothetical protein.
  
     0.527
SHH08954.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
       0.506
SHH63239.1
Outer membrane protein beta-barrel domain-containing protein.
  
    0.495
SHH75738.1
Histone H1-like protein Hc1.
  
     0.477
SHF86618.1
Hypothetical protein.
  
     0.475
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.