STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH40457.12TM domain-containing protein. (101 aa)    
Predicted Functional Partners:
SHH40534.1
2TM domain-containing protein.
 
    
0.785
SHH40418.1
Histidine kinase.
 
    
0.782
SHH40572.1
2TM domain-containing protein.
 
    
0.778
SHH40496.1
2TM domain-containing protein.
       0.773
SHH40606.1
Two component transcriptional regulator, LytTR family.
 
  0.769
SHH40376.1
Hypothetical protein.
       0.720
SHH40335.1
Uncharacterized conserved protein, DUF2141 family.
       0.572
SHH35314.1
Hypothetical protein.
  
     0.536
SHH33403.1
Hypothetical protein.
  
     0.460
SHG69586.1
Protein of unknown function.
  
     0.441
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.