Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF81485.1 | SHH53509.1 | SAMN05443663_101213 | SAMN05443663_108137 | Hypothetical protein. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.415 |
SHF99806.1 | SHH53509.1 | SAMN05443663_101746 | SAMN05443663_108137 | Predicted ABC-type ATPase. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.502 |
SHG72343.1 | SHH53509.1 | SAMN05443663_103547 | SAMN05443663_108137 | CubicO group peptidase, beta-lactamase class C family. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.671 |
SHH37128.1 | SHH53509.1 | SAMN05443663_10795 | SAMN05443663_108137 | Competence/damage-inducible protein cinA; Belongs to the CinA family. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.506 |
SHH39738.1 | SHH53509.1 | SAMN05443663_107158 | SAMN05443663_108137 | Calcineurin-like phosphoesterase. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.412 |
SHH53394.1 | SHH53432.1 | SAMN05443663_108134 | SAMN05443663_108135 | AraC-type DNA-binding protein. | Tetracycline resistance monooxygenase. | 0.788 |
SHH53394.1 | SHH53471.1 | SAMN05443663_108134 | SAMN05443663_108136 | AraC-type DNA-binding protein. | Hypothetical protein. | 0.439 |
SHH53394.1 | SHH53509.1 | SAMN05443663_108134 | SAMN05443663_108137 | AraC-type DNA-binding protein. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.413 |
SHH53394.1 | SHH53588.1 | SAMN05443663_108134 | SAMN05443663_108139 | AraC-type DNA-binding protein. | SnoaL-like domain-containing protein. | 0.414 |
SHH53432.1 | SHH53394.1 | SAMN05443663_108135 | SAMN05443663_108134 | Tetracycline resistance monooxygenase. | AraC-type DNA-binding protein. | 0.788 |
SHH53432.1 | SHH53471.1 | SAMN05443663_108135 | SAMN05443663_108136 | Tetracycline resistance monooxygenase. | Hypothetical protein. | 0.640 |
SHH53432.1 | SHH53509.1 | SAMN05443663_108135 | SAMN05443663_108137 | Tetracycline resistance monooxygenase. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.529 |
SHH53471.1 | SHH53394.1 | SAMN05443663_108136 | SAMN05443663_108134 | Hypothetical protein. | AraC-type DNA-binding protein. | 0.439 |
SHH53471.1 | SHH53432.1 | SAMN05443663_108136 | SAMN05443663_108135 | Hypothetical protein. | Tetracycline resistance monooxygenase. | 0.640 |
SHH53471.1 | SHH53509.1 | SAMN05443663_108136 | SAMN05443663_108137 | Hypothetical protein. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.718 |
SHH53471.1 | SHH53554.1 | SAMN05443663_108136 | SAMN05443663_108138 | Hypothetical protein. | Hypothetical protein. | 0.505 |
SHH53471.1 | SHH53588.1 | SAMN05443663_108136 | SAMN05443663_108139 | Hypothetical protein. | SnoaL-like domain-containing protein. | 0.507 |
SHH53509.1 | SHF81485.1 | SAMN05443663_108137 | SAMN05443663_101213 | DNA-binding transcriptional regulator, XRE-family HTH domain. | Hypothetical protein. | 0.415 |
SHH53509.1 | SHF99806.1 | SAMN05443663_108137 | SAMN05443663_101746 | DNA-binding transcriptional regulator, XRE-family HTH domain. | Predicted ABC-type ATPase. | 0.502 |
SHH53509.1 | SHG72343.1 | SAMN05443663_108137 | SAMN05443663_103547 | DNA-binding transcriptional regulator, XRE-family HTH domain. | CubicO group peptidase, beta-lactamase class C family. | 0.671 |
page 1 of 2