STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH67051.1TonB-linked outer membrane protein, SusC/RagA family. (1030 aa)    
Predicted Functional Partners:
SHH67084.1
Starch-binding associating with outer membrane.
     0.941
SHH01445.1
Starch-binding associating with outer membrane.
 
     0.773
SHG66157.1
Starch-binding associating with outer membrane.
 
     0.772
SHG31326.1
Starch-binding associating with outer membrane.
 
     0.756
SHG33871.1
Starch-binding associating with outer membrane.
  
 
   0.732
SHH06197.1
Starch-binding associating with outer membrane.
  
 
   0.727
SHH85005.1
Starch-binding associating with outer membrane.
 
     0.706
SHH77860.1
SusD family protein.
  
 
   0.677
SHH66706.1
Outer membrane receptor proteins, mostly Fe transport.
  
  
  0.630
SHF88246.1
Hypothetical protein.
  
  0.623
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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