STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH77837.1TonB-linked outer membrane protein, SusC/RagA family. (1000 aa)    
Predicted Functional Partners:
SHH77860.1
SusD family protein.
 
     0.941
SHH06197.1
Starch-binding associating with outer membrane.
  
     0.724
SHH61397.1
Starch-binding associating with outer membrane.
  
     0.711
SHH72497.1
Starch-binding associating with outer membrane.
  
     0.700
SHF93770.1
TonB protein C-terminal.
  
  0.675
SHH33726.1
Hypothetical protein.
  
  0.652
SHG72715.1
Outer membrane transport energization protein TonB.
  
  0.647
SHF88214.1
TonB protein C-terminal.
  
  0.638
SHF88246.1
Hypothetical protein.
  
  0.628
SHG89383.1
Protein TonB.
  
  0.619
Your Current Organism:
Flavobacterium defluvii
NCBI taxonomy Id: 370979
Other names: DSM 17963, F. defluvii, Flavobacterium defluvii Park et al. 2007 emend. Chen et al. 2013, Flavobacterium sp. EMB117, KCTC 12612, strain EMB117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.