STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGT95172.1Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)    
Predicted Functional Partners:
KGT95170.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.982
maiA
Asp/Glu racemase; Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.
 
 
 0.958
KGT95169.1
6-hydroxynicotinate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.899
KGT95168.1
2,5-dihydroxypyridine 5,6-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.853
KGT88443.1
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.833
KGT95165.1
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.832
KGT90559.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
KGT95104.1
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.688
KGT95524.1
Dioxygenase; Similar to the 3-(2,3-dihydroxyphenyl)propionate dioxygenase from E. coli; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
KGT95166.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.595
Your Current Organism:
Erwinia typographi
NCBI taxonomy Id: 371042
Other names: DSM 22678, E. typographi, Erwinia sp. DSM 22678, Erwinia sp. DSM 24222, Erwinia sp. DSM 24223, Erwinia sp. Y4, Erwinia sp. Y7, Erwinia typographi Skrodenyte-Arbaciauskiene et al. 2012, LMG 25347, LMG:25347, Pantoea sp. Y1, strain Y1
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