SMC43826.1 protein (Aerococcus suis) - STRING interaction network

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Score

SMC43826.1

ATP-binding cassette, subfamily F, member 3. (648 aa)

Predicted Functional Partners:

rplU

0.758

rpsO

0.755

rpsC

0.754

rplM

0.752

rplD

0.752

rpmH

0.747

rplR

0.746

rplC

0.745

rpmF

0.744

rpmD

0.744

Your Current Organism:

Aerococcus suis

NCBI taxonomy Id: 371602
Other names: Aerococcus suis Vela et al. 2007 emend. Tohno et al. 2014, CCUG 52530, CECT 7139, DSM 21500, JCM 18035

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMC43826.1	rplC	SAMN04487984_1147	SAMN04487984_1098	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.745
SMC43826.1	rplD	SAMN04487984_1147	SAMN04487984_1097	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.752
SMC43826.1	rplM	SAMN04487984_1147	SAMN04487984_1062	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.752
SMC43826.1	rplR	SAMN04487984_1147	SAMN04487984_1082	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.746
SMC43826.1	rplU	SAMN04487984_1147	SAMN04487984_0374	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.758
SMC43826.1	rpmD	SAMN04487984_1147	SAMN04487984_1080	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L30.	0.744
SMC43826.1	rpmF	SAMN04487984_1147	SAMN04487984_0517	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.744
SMC43826.1	rpmH	SAMN04487984_1147	SAMN04487984_1248	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.747
SMC43826.1	rpsC	SAMN04487984_1147	SAMN04487984_1092	ATP-binding cassette, subfamily F, member 3.	Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.754
SMC43826.1	rpsO	SAMN04487984_1147	SAMN04487984_0203	ATP-binding cassette, subfamily F, member 3.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.755
rplC	SMC43826.1	SAMN04487984_1098	SAMN04487984_1147	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATP-binding cassette, subfamily F, member 3.	0.745
rplC	rplD	SAMN04487984_1098	SAMN04487984_1097	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN04487984_1098	SAMN04487984_1062	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplR	SAMN04487984_1098	SAMN04487984_1082	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplU	SAMN04487984_1098	SAMN04487984_0374	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplC	rpmD	SAMN04487984_1098	SAMN04487984_1080	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L30.	0.999
rplC	rpmF	SAMN04487984_1098	SAMN04487984_0517	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.999
rplC	rpmH	SAMN04487984_1098	SAMN04487984_1248	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.999
rplC	rpsC	SAMN04487984_1098	SAMN04487984_1092	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsO	SAMN04487984_1098	SAMN04487984_0203	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999