STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEW26142.1cob(II)yrinic acid a,c-diamide reductase; KEGG: sil:SPO3254 cobalamin biosynthesis protein BluB; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase. (210 aa)    
Predicted Functional Partners:
cobT
Nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
 
 0.994
EEW25456.1
PFAM: flavin reductase domain protein FMN-binding; KEGG: atc:AGR_L_3083 hypothetical protein.
  
 
 0.918
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: rde:RD1_1311 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.872
EEW26866.1
PFAM: cobalbumin biosynthesis protein; KEGG: sil:SPO0405 cobinamide kinase/cobinamide phosphate guanyltransferase.
 
 0.863
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.859
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
  
 0.794
EEW24748.1
TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pde:Pden_2535 precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family.
 
 
 0.756
EEW26260.1
TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: rde:RD1_1331 threonine-phosphate decarboxylase, putative.
 
  
 0.746
EEW26140.1
TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: pde:Pden_3880 chorismate mutase.
       0.720
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...]
       0.712
Your Current Organism:
Rhodobacter sp. SW2
NCBI taxonomy Id: 371731
Other names: R. sp. SW2, Rhodobacter sp. SW 2
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