STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argGArgininosuccinate synthase; COG_category E;COG_number COG0137; ArgG; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (399 aa)    
Predicted Functional Partners:
argH
Argininosuccinate lyase; COG_category E;COG_number COG0165; ArgH.
 
 0.999
argF
Ornithine carbamoyltransferase chain F; COG_category E;COG_number COG0078; ArgF.
  
 
 0.997
carB
Carbamoyl-phosphate synthase large chain; COG_category E;COG_number COG0458; CarB; Belongs to the CarB family.
 
 
 0.995
argB
Acetylglutamate kinase; COG_category E;COG_number COG0548; ArgB.
  
  
 0.993
thrA
Aspartokinase I / homoserine dehydrogenase I; COG_category E;COG_number COG0460, COG0527; ThrA; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.956
carA
Carbamoyl-phosphate synthase small chain; COG_category E;COG_number COG0505; CarA; Belongs to the CarA family.
  
 
 0.900
pheS
phenylalanyl-tRNA synthetase, a subunit; COG_category J;COG_number COG0016; PheS; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
      0.734
fliN
Flagellar motor switch protein, C-ring protein; COG_category N;COG_number COG1886; FliN.
    
   0.671
trxA
Thioredoxin; COG_category O;COG_number COG0492; TrxA; Belongs to the thioredoxin family.
   
   0.638
hisI
phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase; COG_category E;COG_number COG0139, COG0140; HisI; In the N-terminal section; belongs to the PRA-CH family.
  
  
 0.637
Your Current Organism:
Buchnera aphidicola BCc
NCBI taxonomy Id: 372461
Other names: B. aphidicola BCc, Buchnera aphidicola str. Cc (Cinara cedri)
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