Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yfcNPutative phage-like protein; COG_category S;COG_number COG2840; YfcN. (178 aa)    
Predicted Functional Partners:
rplY
50S ribosomal protein L25; COG_category J;COG_number COG1825; RplY; Belongs to the bacterial ribosomal protein bL25 family.
  
 
   0.805
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
   0.787
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.753
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
   0.753
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
   0.750
rpmH
50S ribosomal protein L34; COG_category J;COG_number COG0230; RpmH; Belongs to the bacterial ribosomal protein bL34 family.
    
   0.749
rplA
50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
    
   0.749
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.749
rpsU
30S ribosomal protein S21; COG_category J;COG_number COG0828; RpsU; Belongs to the bacterial ribosomal protein bS21 family.
    
   0.749
rpmG
50S ribosomal protein L33; COG_category J;COG_number COG0267; RpmG; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.749
Your Current Organism:
Buchnera aphidicola BCc
NCBI taxonomy Id: 372461
Other names: B. aphidicola BCc, Buchnera aphidicola str. Cc (Cinara cedri)
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