Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ychAHypothetical protein; COG_category S;COG_number COG2912; YchA. (269 aa)    
Predicted Functional Partners:
hemK
N5-glutamine methyltransferase, release factors activity modulator; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.803
zapA
Conserved protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
     0.774
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.772
yaeT
Outer membrane protein precursor; COG_category J;COG_number COG4775; YaeT.
  
     0.771
flgF
Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.
  
     0.766
rnb
Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction.
  
     0.718
yfcN
Putative phage-like protein; COG_category S;COG_number COG2840; YfcN.
  
     0.707
yrbA
Putative transcriptional regulator, bolA family; COG_category R;COG_number COG5007; YrbA.
  
     0.692
dnaC
DNA replication protein; COG_category L;COG_number COG1484; DnaC.
  
     0.683
ygfZ
Predicted folate-dependent regulatory protein involved in one-carbon metabolism; COG_category R;COG_number COG0354; YgfZ; Belongs to the GcvT family.
 
     0.675
Your Current Organism:
Buchnera aphidicola BCc
NCBI taxonomy Id: 372461
Other names: B. aphidicola BCc, Buchnera aphidicola str. Cc (Cinara cedri)
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