flgF protein (Buchnera aphidicola BCc) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

flgF

Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF. (234 aa)

Predicted Functional Partners:

flgH

0.999

flgI

0.999

fliF

0.991

fliH

0.984

fliR

0.983

fliG

0.980

fliQ

0.953

flhB

0.942

fliN

0.941

fliP

0.867

Your Current Organism:

Buchnera aphidicola BCc

NCBI taxonomy Id: 372461
Other names: B. aphidicola BCc, Buchnera aphidicola str. Cc (Cinara cedri)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
flgF	flgH	BCc_211	BCc_212	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
flgF	flgI	BCc_211	BCc_213	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
flgF	flhB	BCc_211	BCc_150	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Type III protein export, membrane component; COG_category N;COG_number COG1377; FlhB.	0.942
flgF	fliF	BCc_211	BCc_043	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Flagellar basal-body MS-ring and collar protein; COG_category N;COG_number COG1766; FliF.	0.991
flgF	fliG	BCc_211	BCc_044	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Flagellar motor switch protein; COG_category N;COG_number COG1536; FliG.	0.980
flgF	fliH	BCc_211	BCc_045	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Soluble component of the flagellar export system; COG_category N;COG_number COG1317; FliH.	0.984
flgF	fliN	BCc_211	BCc_047	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Flagellar motor switch protein, C-ring protein; COG_category N;COG_number COG1886; FliN.	0.941
flgF	fliP	BCc_211	BCc_048	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Type III protein export, membrane component; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.867
flgF	fliQ	BCc_211	BCc_049	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Type III protein export, membrane component; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.953
flgF	fliR	BCc_211	BCc_050	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	Type III protein export, membrane component; COG_category N;COG_number COG1684; FliR.	0.983
flgH	flgF	BCc_212	BCc_211	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagellar basal-body rod protein; COG_category N;COG_number COG4787; FlgF.	0.999
flgH	flgI	BCc_212	BCc_213	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.999
flgH	flhB	BCc_212	BCc_150	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Type III protein export, membrane component; COG_category N;COG_number COG1377; FlhB.	0.974
flgH	fliF	BCc_212	BCc_043	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagellar basal-body MS-ring and collar protein; COG_category N;COG_number COG1766; FliF.	0.999
flgH	fliG	BCc_212	BCc_044	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagellar motor switch protein; COG_category N;COG_number COG1536; FliG.	0.998
flgH	fliH	BCc_212	BCc_045	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Soluble component of the flagellar export system; COG_category N;COG_number COG1317; FliH.	0.996
flgH	fliN	BCc_212	BCc_047	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Flagellar motor switch protein, C-ring protein; COG_category N;COG_number COG1886; FliN.	0.996
flgH	fliP	BCc_212	BCc_048	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Type III protein export, membrane component; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.996
flgH	fliQ	BCc_212	BCc_049	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Type III protein export, membrane component; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.997
flgH	fliR	BCc_212	BCc_050	Flagellar L-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	Type III protein export, membrane component; COG_category N;COG_number COG1684; FliR.	0.987