Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FUBP1Uncharacterized protein. (678 aa)    
Predicted Functional Partners:
KHSRP
KH-type splicing regulatory protein.
   
   0.993
FUBP3
Far upstream element binding protein 3.
   
   0.972
PUF60
Poly(U) binding splicing factor 60.
   
 
 0.962
CPSF6
Cleavage and polyadenylation specific factor 6.
   
 
 0.843
AIMP2
Aminoacyl tRNA synthetase complex interacting multifunctional protein 2.
    
 
 0.835
BRDT
Bromodomain testis associated.
    
 
 0.821
KHDRBS1
KH RNA binding domain containing, signal transduction associated 1.
   
 
 0.820
HNRNPR
Uncharacterized protein.
   
 
 0.786
SMN1
Tudor domain-containing protein.
    
 
 0.783
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.776
Your Current Organism:
Aotus nancymaae
NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai
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