LOC105707061 protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105707061

Uncharacterized protein. (220 aa)

Predicted Functional Partners:

U2AF2

0.949

SRSF2

0.882

SRSF1

0.841

ENSANAP00000015054

0.841

SRSF8

0.801

RNPS1

0.760

ENSANAP00000024122

0.760

NCBP2

0.757

SF3B2

0.748

SF3B1

0.747

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSANAP00000015054	ENSANAP00000024122	ENSANAP00000015054	ENSANAP00000024122	RRM domain-containing protein.	RRM domain-containing protein.	0.931
ENSANAP00000015054	LOC105707061	ENSANAP00000015054	ENSANAP00000001464	RRM domain-containing protein.	Uncharacterized protein.	0.841
ENSANAP00000015054	NCBP2	ENSANAP00000015054	ENSANAP00000002479	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.856
ENSANAP00000015054	RNPS1	ENSANAP00000015054	ENSANAP00000022111	RRM domain-containing protein.	RNA binding protein with serine rich domain 1.	0.931
ENSANAP00000015054	SF3B1	ENSANAP00000015054	ENSANAP00000007096	RRM domain-containing protein.	Splicing factor 3b subunit 1.	0.773
ENSANAP00000015054	SF3B2	ENSANAP00000015054	ENSANAP00000023240	RRM domain-containing protein.	Splicing factor 3b subunit 2.	0.751
ENSANAP00000015054	SRSF2	ENSANAP00000015054	ENSANAP00000000501	RRM domain-containing protein.	Serine and arginine rich splicing factor 2.	0.961
ENSANAP00000015054	SRSF8	ENSANAP00000015054	ENSANAP00000027560	RRM domain-containing protein.	Serine and arginine rich splicing factor 8.	0.935
ENSANAP00000015054	U2AF2	ENSANAP00000015054	ENSANAP00000020523	RRM domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.987
ENSANAP00000024122	ENSANAP00000015054	ENSANAP00000024122	ENSANAP00000015054	RRM domain-containing protein.	RRM domain-containing protein.	0.931
ENSANAP00000024122	LOC105707061	ENSANAP00000024122	ENSANAP00000001464	RRM domain-containing protein.	Uncharacterized protein.	0.760
ENSANAP00000024122	NCBP2	ENSANAP00000024122	ENSANAP00000002479	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.830
ENSANAP00000024122	RNPS1	ENSANAP00000024122	ENSANAP00000022111	RRM domain-containing protein.	RNA binding protein with serine rich domain 1.	0.544
ENSANAP00000024122	SRSF1	ENSANAP00000024122	ENSANAP00000005024	RRM domain-containing protein.	Uncharacterized protein.	0.931
ENSANAP00000024122	SRSF2	ENSANAP00000024122	ENSANAP00000000501	RRM domain-containing protein.	Serine and arginine rich splicing factor 2.	0.607
ENSANAP00000024122	SRSF8	ENSANAP00000024122	ENSANAP00000027560	RRM domain-containing protein.	Serine and arginine rich splicing factor 8.	0.606
ENSANAP00000024122	U2AF2	ENSANAP00000024122	ENSANAP00000020523	RRM domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.926
LOC105707061	ENSANAP00000015054	ENSANAP00000001464	ENSANAP00000015054	Uncharacterized protein.	RRM domain-containing protein.	0.841
LOC105707061	ENSANAP00000024122	ENSANAP00000001464	ENSANAP00000024122	Uncharacterized protein.	RRM domain-containing protein.	0.760
LOC105707061	NCBP2	ENSANAP00000001464	ENSANAP00000002479	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.757